Discovery Studio Visualizer

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Below are instructions for installing Discovery Studio on Windows systems. For installation on Linux systems, see Installing Discovery Studio on Linux systems.

  1. Discovery Studio Visualizer Download
  2. Discovery Studio Visualizer Biovia
  3. Discovery Studio Visualizer 4.0

(This is not needed if installing only DS Visualizer and/or Client Applications.) Instructions for the installation wizard. If you are installing a downloaded version of DS Visualizer, begin with step 3 below. Mount the Discovery Studio 1.6 media. Change directories to where the Discovery Studio media is. The Discovery Studio Visualizer is a free viewer that can be used to open data generated by other software in the Discovery Studio product line. It is designed to offer an interactive environment for viewing and editing molecular structures, sequences, X-ray reflection data, scripts, and other data. Installing Discovery Studio Visualizer 2017 R2 in Linux Mint 18.3 64-bit Xfce (Based on Ubuntu 16.04 64-bit LTS) Previously, I had questions about installing BIOVIA Discovery Studio Visualizer 2017 R2 in Linux Mint and/or Ubuntu. I have now been successful at this, and I thought it could be helpful to the community to describe the process.

Pre-installation checklist

You should be prepared with the following information before proceeding with the Discovery Studio installation. We recommend reading the entire installation procedure before beginning.

  • System specifications - the computer should meet the minimum requirements.
  • Installation location - you can choose to install the software to a particular folder on your system.
  • It is recommended to remove DS Visualizer 1.5 or Discovery Studio 1.5 prior to installing DS Visualizer 1.6 or Discovery Studio 1.6. See Removing Discovery Studio Help topic.
  • Available ports for HTTP and HTTPS services - installation of the server requires ports for communication purposes. The selected ports cannot be already in use by other applications on your computer. (This is not needed if installing only DS Visualizer and/or Client Applications.)

You must have Administrator privileges to install on Windows systems.

Visualizer

Instructions for the installation wizard

Note. Installation of Discovery Studio may require you to restart your system. To ensure that you do not lose any valuable information, we recommend that you close all other Windows applications and disable antivirus software.

  1. Insert the Discovery Studio media into the drive and double-click setup.exe to start the program.
  2. When the Welcome screen appears, click the Next button.
  3. The Destination Folder screen prompts you to specify the location for the installation. Accept the default location, enter the installation location, or navigate to the desired location by clicking the Change... button. On the Destination Folder screen, click the Next button to proceed with the installation of Discovery Studio.

    If you are installing only DS Visualizer, skip to step 5.

  4. To customize your Discovery Studio install

    During the installation process, you are presented with options for installation, some of which require specific licenses. This step details the available options so that you can configure the required custom installation.

    Features that are not selected during installation are unavailable when working in Discovery Studio. You can run the installer again to modify these choices if you want to change your selection of features at a later time by deselecting the previously installed features.

    Specify whether to install the Client Application or the Server Application or both. Note that these choices affect which screens you see as you complete this installation.

    Under Client Application, select the subsets of features you would like installed and available for use. The following table describes the installation options:

    Installation OptionIncluded ProductsDescription
    DS Visualizer ProDS Visualizer ProIf you choose Client Application, the Visualizer Pro option is automatically selected. Visualizer Pro is a required category for all Client Application installations. Visualizer Pro provides the high-quality visualization features for researchers in the life sciences who seek to explore chemical and biological information in 3D. It allows you to construct, view, and analyze complex models; to access multiple views on data for information rich analysis; and to open files from a wide variety of modeling and sequence analysis applications.
    Protein ModelingDS Protein Families, DS Protein Health, DS Protein Similarity Search, DS MODELER, DS Analysis, DS Biopolymer, DS CHARMm, CFF, DS CHARMm-LiteThis category provides methods for matching sequences to protein structure templates; PDB searching; aligning sequences, templates, or structures; and generating or analyzing 3D structures. It also allows you to study the energetic, dynamic, and electrostatic properties of a protein or protein complexes. Some of the methods are CHARMm, BLAST, MODELER, Align123, Align2D, and Profiles-3D.
    Computational ChemistryDS LigandScore, DS Ludi, DS LigandFit, DS Analysis, DS Biopolymer, DS CHARMm, CFF, DS CHARMm-LiteThis category allows you to explore potential binding modes of novel ligands via docking and scoring: extend docking with in situ minimization, scoring, and scoring to virtually screen libraries of compounds for potential hits; and generate, find, and optimize fragment ligands with de novo design tools. Some of the methods include Ludi, LigandFit, DockScore, Gold Docking, and Docking Refinement.

    The Server Application option is required to execute server protocols through Pipeline Pilot on this machine.

    • Upon finalizing your choices on the Select Features screen, click the Next button.
    • If you selected Server Application, you will be presented with the following:
    • The Pipeline Pilot Destination Folder screen opens. Accept the default or browse to a new location. Click the Next button to continue.
    • To set the for the HTTP and HTTPS port numbers to be used by Pipeline Pilot for the Apache process, accept the defaults or enter new values. Note that these ports must not be in use by other services.
    • If you have a firewall enabled, a Windows Security Alert dialog displays. Choose Allow to continue with the installation.
    • Discovery Studio installs and starts a web server. If you see a message informing you that Apache is trying to start, click Yes, allow Apache to start.
  5. On the File Association screen, select whether you want to associate files to automatically open with Discovery Studio.
  6. On the Ready to Install the Program screen, click the Install button to complete the installation.

    If you are installing only DS Visualizer, click the Finish button on the Install Wizard Complete screen to complete the installation and skip all remaining steps.

  7. When the installer reports completion of the Discovery Studio 1.6 and Accelrys License Pack installation, click the Finish button.
  8. The Accelrys License Administrator starts. Follow the online instructions for installing a temporary license. If you do not have a password, click the Close button to complete the installation. You can configure licensing, if necessary, after installation. If a temporary license is installed successfully, click the Finish button to complete the installation.

After the installation has completed, Discovery Studio is ready for use. Start the application using the shortcut provided in the Windows Start menu.

Discovery Studio Visualizer Download

If you installed the server, you can connect to it using the hostname and the port number specified during installation.

Discovery Studio Visualizer Biovia

To learn more about working with Discovery Studio, see the Help topics available from the Help menu in the Discovery Studio client.

Discovery Studio Visualizer 4.0

Further information

General system requirements and recommendations
Installing Discovery Studio on Linux
Removing Discovery Studio